Basic Information
Locus ID:
gene_25213
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 41676555 | 41690290 | + | gene_25213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 133,208.77 Da | 37.99 | 85.47 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17814 | LisH-like dimerisation domain | 148 | 175 | 7.8E-6 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 545 | 580 | 0.0029 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 918 | 1177 | 3.66E-32 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 443 | 753 | 7.73E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 848 | 1038 | 2.8E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1040 | 1179 | 1.1E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 403 | 806 | 6.4E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 495 | 533 | 58.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 580 | 6.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 433 | 472 | 12.0 | IPR001680 |
| SMART | SM00668 | ctlh | 175 | 233 | 1.4E-8 | IPR006595 |
| SMART | SM00320 | WD40_4 | 985 | 1024 | 0.0036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 671 | 711 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 943 | 982 | 2.8 | IPR001680 |
| SMART | SM00667 | Lish | 145 | 177 | 0.005 | IPR006594 |
| SMART | SM00320 | WD40_4 | 1070 | 1109 | 57.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 546 | 584 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 992 | 1033 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 689 | 720 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 175 | 233 | 11.348021 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 992 | 1024 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 546 | 589 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 145 | 177 | 9.251827 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 567 | 581 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 137 | - | - |
| Coils | Coil | Coil | 64 | 84 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_022732514.1 | protein TPR3-like isoform X2 [Durio zibethinus] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7C2M3 | Topless-related protein 1-like OS=Davidia involucrata OX=16924 GN=Din_043937 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25213 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030840 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018332 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62347, Sgl66884 |