Basic Information
Locus ID:
gene_25211
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 41652748 | 41660260 | + | gene_25211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 116,498.39 Da | 37.88 | 81.03 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04015 | C2_plant_PLD | 85 | 234 | 2.10832E-47 | - |
| Pfam | PF00168 | C2 domain | 137 | 215 | 2.3E-11 | IPR000008 |
| Pfam | PF12357 | Phospholipase D C terminal | 819 | 868 | 1.5E-14 | IPR024632 |
| Pfam | PF00614 | Phospholipase D Active site motif | 422 | 461 | 2.3E-6 | IPR001736 |
| Pfam | PF00614 | Phospholipase D Active site motif | 748 | 774 | 1.7E-7 | IPR001736 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 239 | 533 | 1.95E-27 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 133 | 236 | 3.27E-15 | IPR035892 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 595 | 829 | 1.34E-27 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 88 | 250 | 2.3E-10 | IPR035892 |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 281 | 541 | 1.2E-20 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 571 | 795 | 1.1E-21 | - |
| SMART | SM00155 | pld_4 | 420 | 461 | 0.69 | IPR001736 |
| SMART | SM00155 | pld_4 | 747 | 774 | 1.5E-8 | IPR001736 |
| SMART | SM00239 | C2_3c | 89 | 213 | 6.1E-6 | IPR000008 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 747 | 774 | 15.2604 | IPR001736 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 103 | 214 | 11.231287 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko00565 (Ether lipid metabolism)
map00565 (Ether lipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04072 (Phospholipase D signaling pathway)
map04072 (Phospholipase D signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15730.1 | phospholipase D alpha 1. Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis. | 0 |
| RefSeq | XP_021848721.1 | phospholipase D alpha 1-like [Spinacia oleracea] | 0 |
| Q41142 | Phospholipase D alpha 1 OS=Ricinus communis OX=3988 GN=PLD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RGQ4 | Phospholipase D OS=Spinacia oleracea OX=3562 GN=SOVF_068870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology