Basic Information
Locus ID:
gene_25203
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 41518708 | 41527506 | + | gene_25203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 64,467.80 Da | 31.95 | 102.56 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 3.72815E-25 | - |
| CDD | cd00030 | C2 | 442 | 538 | 3.94177E-26 | - |
| Pfam | PF00168 | C2 domain | 262 | 366 | 3.0E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 440 | 533 | 1.1E-24 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 4.4E-15 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 437 | 559 | 6.12E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 1.57E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 422 | 558 | 4.0E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 402 | 3.1E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 441 | 539 | 1.8E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 263 | 363 | 1.0E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 421 | 540 | 21.10265 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 21.216278 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 30.70816 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 457 | 469 | 5.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 505 | 513 | 5.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 496 | 5.1E-7 | IPR000008 |
| Coils | Coil | Coil | 415 | 435 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021769371.1 | synaptotagmin-5-like isoform X1 [Chenopodium quinoa] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EDV8 | Synaptotagmin-5 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology