Basic Information
Locus ID:
gene_25176
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
RDR6
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 41027942 | 41035328 | + | gene_25176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 138,107.39 Da | 36.66 | 81.46 | -0.39 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49500.1 | RNA-dependent RNA polymerase 6. Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance. | 0 |
| RefSeq | XP_021738488.1 | RNA-dependent RNA polymerase 6-like [Chenopodium quinoa] | 0 |
| Q9SG02 | RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1L5JKD0 | RNA-dependent RNA polymerase OS=Sesuvium portulacastrum OX=221166 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36597 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25176 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034694 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21597, Sbi_jg22222 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13451, Seu_jg16148 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008751 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62696, Sgl67257, Sgl67317 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016847, gene:ENSEOMG00000021381 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021290, CQ.Regalona.r1.2AG0022890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30249990 |
| Apiaceae | Apium graveolens | 2 | Ag4G01694, Ag4G02763 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007470 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698619 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2720.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G12470 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010107m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12590.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g048150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2336 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2541 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g01100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02000 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1443 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011863 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12670 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.1857, AH08.647, AH08.649, BH02.1871, BH08.702, CH08.785 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0019150, gene-QOZ80_1BG0069190 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0320600.1, HORVU.MOREX.r3.7HG0643980.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_017605 |
| Poaceae | Oryza coarctata | 2 | Oco01G011720, Oco02G011970 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g34350.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G130300, gene-BS78_07G082900 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603278, Pt_Chr0604877 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr05G015150, Chr16G002770, Chr16G002780, Chr16G002800 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G793400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG069340, gene_TRIDC3BG078680 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G543300.1, TraesCS3D02G489400.1 |
| Poaceae | Zea mays | 2 | Zm00001eb132680_P001, Zm00001eb389140_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21349, nbis-gene-48600 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10526, Zma_g23769 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2513, evm.TU.LG17.1557 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g12150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.850 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13633 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12435 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9096 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.164 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004000 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3780 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7869 |
| Salicaceae | Populus euphratica | 2 | populus_peu04766, populus_peu12891 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132635634, gene-LOC132636213 |
| Solanaceae | Solanum chilense | 2 | SOLCI004086100, SOLCI005617800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017736, gene-LOC107029057 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15411 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1524, TC03G1590 |
| Zosteraceae | Zostera marina | 2 | Zosma02g02980.v3.1, Zosma557g00070.v3.1 |