Basic Information
Locus ID:
gene_25145
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 40437415 | 40446373 | + | gene_25145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 93,100.75 Da | 51.45 | 93.30 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 252 | 294 | 5.33255E-24 | - |
| Pfam | PF04564 | U-box domain | 248 | 318 | 2.1E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 676 | 713 | 6.1E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 594 | 631 | 2.9E-11 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 237 | 325 | 5.05E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 563 | 835 | 8.96E-48 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 322 | 1.5E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 543 | 842 | 3.9E-62 | IPR011989 |
| SMART | SM00185 | arm_5 | 755 | 795 | 0.89 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 251 | 314 | 2.0E-31 | IPR003613 |
| SMART | SM00185 | arm_5 | 592 | 632 | 1.2E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 715 | 754 | 0.0011 | IPR000225 |
| SMART | SM00185 | arm_5 | 633 | 673 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 674 | 714 | 1.6 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 726 | 767 | 10.7274 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 247 | 321 | 40.223164 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 603 | 645 | 12.9324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 685 | 727 | 10.0274 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 400 | - | - |
| Coils | Coil | Coil | 556 | 576 | - | - |
| Coils | Coil | Coil | 201 | 221 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23140.2 | RING/U-box superfamily protein with ARM repeat domain. | 0 |
| RefSeq | XP_021746257.1 | U-box domain-containing protein 4-like [Chenopodium quinoa] | 0 |
| O22193 | U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9R2X2 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_112210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4700, jg4701 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23981, gene_25145 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031925 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g043480, BVRB_2g043510, BVRB_6g127640 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg13104, Sbi_jg30282, Sbi_jg43700, Sbi_jg51997 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg18207, Seu_jg9099, Seu_jg9860 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010153, GOSA_00023210 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl33857, Sgl39230, Sgl65815, Sgl65847, Sgl70157 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000003241, gene:ENSEOMG00000013691 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0001890, CQ.Regalona.r1.2BG0002930 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205470 |
| Apiaceae | Apium graveolens | 2 | Ag10G01048, Ag5G00312 |
| Arecaceae | Cocos nucifera | 4 | COCNU_09G009970, COCNU_10G009950, COCNU_10G009960 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716639, gene-LOC103720451 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3469.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G13639, Ftri18G27750, Ftri1G22182, Ftri6G20170 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G23140.1, AT5G67340.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000047m.g.v1.0, Thhalv10003745m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g29320.v2.2, Sp4g02200.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g020620.2N, BniB02g020030.2N, BniB06g014510.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1384 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1385 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno11g11290, gene.Cymno11g11310 |
| Hydrocharitaceae | Thalassia testudinum | 6 | gene.Thate05g03190, gene.Thate05g03210, gene.Thate05g03280 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-10061, nbisL1-mrna-10549, nbisL1-mrna-10550 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.945 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003835 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05542, Lb2G08468 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4102, AH08.90, BH02.4117, BH08.39, CH02.4148, CH08.159 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0614970, gene-QOZ80_8BG0642450 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0297900.1, HORVU.MOREX.r3.3HG0327220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057192 |
| Poaceae | Oryza coarctata | 3 | Oco02G027740, Oco15G000510, Oco16G000650 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g66130.1, LOC_Os08g01900.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G359600, gene-BS78_07G013600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0600380, Pt_Chr0700676, Pt_Chr0700704 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G021530, Chr08G020670, Chr16G000010, Chr20G013580 |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G618300, Tel3E01G651500, Tel3E01G878100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG055610, gene_TRIDC3AG058350 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G390200.1, TraesCS3A02G521300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb145570_P001, Zm00001eb174100_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11168, nbis-gene-41408, nbis-gene-51935 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22360, Zma_g23507, Zma_g9143 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG10.869, evm.TU.LG18.381, evm.TU.LG25.1223 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g06870, gene.Posoc08g08720 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1819 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17331 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2336 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11949 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1113 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007880 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15470 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3267 |
| Salicaceae | Populus euphratica | 5 | populus_peu14468, populus_peu14478, populus_peu23323 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132601989, gene-LOC132604584, gene-LOC132626552 |
| Solanaceae | Solanum chilense | 3 | SOLCI005329600, SOLCI005442400, SOLCI006710000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007682, gene-LOC107008077 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4815_chr03_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1828 |
| Zosteraceae | Zostera marina | 1 | Zosma01g09780.v3.1 |