Basic Information
Locus ID:
gene_25140
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 40357258 | 40362300 | + | gene_25140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 57,161.70 Da | 38.34 | 90.90 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01603 | Protein phosphatase 2A regulatory B subunit (B56 family) | 71 | 483 | 3.9E-178 | IPR002554 |
| SUPERFAMILY | SSF48371 | ARM repeat | 82 | 463 | 1.87E-148 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 76 | 482 | 8.1E-174 | IPR011989 |
| PIRSF | PIRSF028043 | PP2A_B56 | 3 | 499 | 2.0E-223 | IPR002554 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 41 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04113 (Meiosis - yeast)
map04113 (Meiosis - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25510.1 | Protein phosphatase 2A regulatory B subunit family protein. | 0 |
| RefSeq | XP_021758098.1 | serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like [Chenopodium quinoa] | 0 |
| Q93YV6 | Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform OS=Arabidopsis thaliana OX=3702 GN=B'KAPPA PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RDW9 | Serine/threonine protein phosphatase 2A regulatory subunit OS=Spinacia oleracea OX=3562 GN=SOVF_082210 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology