Basic Information
Locus ID:
gene_25060
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 38982234 | 38984317 | + | gene_25060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 48,578.11 Da | 38.41 | 80.23 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 60 | 1.4E-4 | IPR001810 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 337 | 384 | 7.3E-11 | IPR005174 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 57 | 1.7E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 56 | 1.9E-6 | - |
| SMART | SM00256 | fbox_2 | 20 | 60 | 0.0013 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35733.1 | F-box family protein with a domain of unknown function (DUF295). | 0 |
| RefSeq | XP_021863535.1 | F-box protein SKIP23-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9QEL0 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_194570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_1759, gene_1762, gene_25060, gene_4990, gene_4991 |