Basic Information
Locus ID:
gene_24973
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 37493114 | 37508167 | + | gene_24973 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 113,897.36 Da | 36.54 | 82.96 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 317 | 1.22961E-180 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 359 | 451 | 1.3E-21 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 894 | 1000 | 4.5E-10 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 354 | 3.5E-93 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 599 | 812 | 4.8E-48 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 359 | 456 | 1.21E-27 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 1004 | 5.65E-138 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 355 | 4.36E-107 | IPR011330 |
| Gene3D | G3DSA:2.70.98.30 | - | 594 | 860 | 4.2E-91 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 402 | 457 | 1.5E-21 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 323 | 401 | 9.0E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 477 | 592 | 7.1E-28 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 322 | 1.6E-120 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 880 | 1010 | 1.0E-33 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 359 | 433 | 9.8E-25 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_010682967.2 | alpha-mannosidase At3g26720 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZIS1 | Alpha-mannosidase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology