Basic Information
Locus ID:
gene_24972
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 37477940 | 37491900 | + | gene_24972 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 114,084.58 Da | 35.25 | 86.11 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 37 | 312 | 0.0 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 892 | 999 | 1.3E-10 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 596 | 810 | 2.8E-48 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 38 | 349 | 2.3E-97 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 354 | 446 | 2.7E-21 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 455 | 1002 | 2.35E-145 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 26 | 351 | 1.28E-113 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 353 | 447 | 3.92E-28 | IPR028995 |
| Gene3D | G3DSA:2.60.40.1360 | - | 879 | 1005 | 5.0E-36 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 466 | 591 | 1.1E-27 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 318 | 395 | 2.6E-31 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 396 | 452 | 1.0E-20 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 37 | 317 | 4.7E-123 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 592 | 858 | 1.4E-95 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 354 | 428 | 2.3E-20 | IPR015341 |
| Coils | Coil | Coil | 939 | 959 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021851647.1 | alpha-mannosidase At3g26720-like [Spinacia oleracea] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CJX7 | Alpha-mannosidase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology