Basic Information
Locus ID:
gene_24968
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 37379924 | 37385103 | + | gene_24968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 113,511.73 Da | 33.92 | 104.60 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 770 | 1038 | 1.1159E-91 | - |
| Pfam | PF13855 | Leucine rich repeat | 613 | 672 | 1.8E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 255 | 277 | 0.4 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 766 | 965 | 5.7E-43 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 73 | 1.6E-11 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 492 | 601 | 6.05E-7 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 96 | 684 | 6.12E-56 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 744 | 1035 | 1.48E-75 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 201 | 1.1E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 202 | 291 | 4.8E-22 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 840 | 1039 | 2.2E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 459 | 702 | 2.0E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 729 | 839 | 2.1E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 293 | 422 | 1.1E-21 | IPR032675 |
| SMART | SM00220 | serkin_6 | 764 | 1039 | 5.0E-41 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 105 | 129 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 155 | 179 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 563 | 587 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 611 | 634 | 3.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 253 | 277 | 55.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 613 | 635 | 7.018892 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 764 | 1038 | 39.452953 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 884 | 896 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 770 | 792 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 369 | 382 | 2.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 611 | 624 | 2.4E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | XP_010682896.2 | LRR receptor-like serine/threonine-protein kinase RPK2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LR58 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology