Basic Information
Locus ID:
gene_24956
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 36971876 | 36981088 | + | gene_24956 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 56,223.69 Da | 49.06 | 88.00 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 313 | 0.076 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 191 | 222 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 52 | 318 | 5.65E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 366 | 3.6E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 273 | 313 | 6.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 81 | 122 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 184 | 222 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 181 | 0.26 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 280 | 316 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 191 | 231 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 280 | 316 | 10.608706 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 300 | 314 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_021736101.1 | WD repeat-containing protein LWD1 [Chenopodium quinoa] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LR81 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology