Basic Information
Locus ID:
gene_24898
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ubiquitin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 34829846 | 34833572 | + | gene_24898 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 31,328.88 Da | 53.12 | 107.02 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 90 | 156 | 3.36043E-9 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 188 | 246 | 1.69669E-5 | - |
| Pfam | PF00240 | Ubiquitin family | 184 | 245 | 9.1E-7 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 90 | 159 | 4.3E-9 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 4 | 71 | 3.9E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 73 | 2.99E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 80 | 159 | 8.98E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 168 | 246 | 1.31E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 87 | 159 | 3.5E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 163 | 249 | 1.4E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 73 | 7.1E-9 | - |
| SMART | SM00213 | ubq_7 | 88 | 159 | 0.26 | IPR000626 |
| SMART | SM00213 | ubq_7 | 173 | 248 | 4.2 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 72 | 7.6E-7 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 88 | 159 | 13.554397 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 65 | 11.964792 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 173 | 245 | 11.899466 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32350.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_021719193.1 | uncharacterized protein LOC110686894 [Chenopodium quinoa] | 0 |
| P0CG70 | Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=ubi PE=3 SV=1 | 0 | |
| TrEMBL | A0A7J0FGM4 | Ubiquitin-like superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_12g0003990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24898 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007967, Ah022537 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21026, Sbi_jg22763 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16636 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018248 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl01855, Sgl01858, Sgl01860, Sgl07007, Sgl07012, Sgl07014 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011855, gene:ENSEOMG00000030547 ... |
| Apiaceae | Apium graveolens | 1 | Ag11G03314 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G16423 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32350.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002923m.g.v1.0, Thhalv10017634m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14720.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g021550.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11138 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.361 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004435 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG18.55 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1354 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20439, nbisL1-mrna-20461 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8799 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21331 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.320 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17199 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4734 |
| Salicaceae | Populus euphratica | 1 | populus_peu24077 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619510 |
| Solanaceae | Solanum chilense | 1 | SOLCI002204000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024252 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13809 |