Basic Information
Locus ID:
gene_24739
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Zinc finger BED domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 28405799 | 28409046 | + | gene_24739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 31,553.84 Da | 42.28 | 78.00 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 200 | 225 | 1.5E-4 | IPR008906 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 61 | 111 | 5.0E-5 | IPR036236 |
| SMART | SM00614 | bed5 | 58 | 110 | 4.3E-11 | - |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 58 | 114 | 9.078139 | IPR003656 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 47 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024963304.1 | zinc finger BED domain-containing protein RICESLEEPER 1-like [Cynara cardunculus var. scolymus] | 0 |
| TrEMBL | A0A803MEK6 | BED-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_18523, gene_18908, gene_24739, gene_757 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah002403, Ah025340, Ah025341, Ah035896 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g136250, BVRB_7g170450 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg16564, Sbi_jg23483, Sbi_jg33887, Sbi_jg40651 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14931, Seu_jg27982 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl18348, Sgl25401, Sgl30582, Sgl30712, Sgl32903, Sgl38164 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000006175, gene:ENSEOMG00000019503 |
| Amaranthaceae | Chenopodium quinoa | 30 | CQ.Regalona.r1.1AG0015170, CQ.Regalona.r1.1BG0000790 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009065 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16891 |
| Zosteraceae | Zostera marina | 2 | Zosma04g10920.v3.1, Zosma04g21000.v3.1 |