Basic Information
Locus ID:
gene_24652
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
CSC1-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 22458063 | 22479078 | + | gene_24652 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 77,765.97 Da | 44.20 | 106.18 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13967 | Late exocytosis, associated with Golgi transport | 6 | 167 | 1.6E-40 | IPR032880 |
| Pfam | PF14703 | Cytosolic domain of 10TM putative phosphate transporter | 188 | 341 | 1.8E-29 | IPR027815 |
| Pfam | PF02714 | Calcium-dependent channel, 7TM region, putative phosphate | 429 | 588 | 6.8E-43 | IPR003864 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 681 | - | - |
| Coils | Coil | Coil | 273 | 293 | - | - |
| Coils | Coil | Coil | 232 | 252 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01100.1 | hypothetical protein 1. unknown protein, has cDNAs and ESTs associated to it | 0 |
| RefSeq | XP_021770854.1 | CSC1-like protein HYP1 isoform X1 [Chenopodium quinoa] | 0 |
| Q8GUH7 | CSC1-like protein HYP1 OS=Arabidopsis thaliana OX=3702 GN=HYP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EGL7 | CSC1-like protein HYP1 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology