Basic Information
Locus ID:
gene_24620
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 20851274 | 20856115 | + | gene_24620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 23,908.53 Da | 69.92 | 65.21 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14180.1 | sequence-specific DNA binding transcription factors. | 0 |
| RefSeq | XP_031504258.1 | trihelix transcription factor ENAP1-like isoform X3 [Nymphaea colorata] | 0 |
| Q9LJG8 | Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana OX=3702 GN=ASIL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5K0Z7Y3 | Myb_DNA-bind_4 domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS9627 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_18400, gene_18664, gene_24620, gene_3959, gene_683 |
| Apiaceae | Apium graveolens | 1 | Ag3G01124 |
| Arecaceae | Cocos nucifera | 7 | COCNU_01G004170, COCNU_01G004180, COCNU_01G004190 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013102, Pov_00020524 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG05.1782 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.44822.1, evm.TU.45225.1 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12784, nbisL1-mrna-12785 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16414, nbisL1-mrna-16417 |
| Solanaceae | Solanum chilense | 1 | SOLCI001117600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008469, gene-LOC107014036 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.22124_chr09_-, STRG.740_chr01_- |