Basic Information
Locus ID:
gene_24434
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 14113688 | 14119048 | + | gene_24434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 104,912.57 Da | 45.33 | 91.95 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 771 | 795 | 0.47 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 394 | 420 | 3.7E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 194 | 223 | 0.0014 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 90 | 138 | 7.2E-14 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 263 | 290 | 9.0E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 293 | 322 | 1.7E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 695 | 742 | 9.1E-10 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 568 | 589 | 0.033 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 493 | 536 | 2.0E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 594 | 637 | 2.1E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 166 | 193 | 0.0019 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 91 | 861 | 3.98E-6 | IPR011990 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 891 | 941 | 3.19E-10 | IPR036322 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 339 | 447 | 1.7E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 142 | 259 | 3.8E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 260 | 338 | 2.1E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 547 | 649 | 1.8E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 448 | 546 | 1.8E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 651 | 746 | 3.9E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 25 | 141 | 1.2E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 747 | 939 | 1.3E-13 | IPR011990 |
| SMART | SM00320 | WD40_4 | 904 | 943 | 3.3E-4 | IPR001680 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 194 | 227 | 7.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 94 | 126 | 3.2E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 597 | 630 | 2.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 263 | 293 | 0.001 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 495 | 528 | 2.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 670 | 698 | 4.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 166 | 194 | 3.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 698 | 731 | 5.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 467 | 493 | 0.002 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 293 | 326 | 2.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 394 | 427 | 1.1E-5 | IPR002885 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 911 | 943 | 8.913786 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 161 | 191 | 8.714292 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | 9.821383 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 91 | 125 | 12.364404 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 696 | 730 | 11.005202 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 192 | 226 | 11.125777 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 911 | 943 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 595 | 629 | 10.950397 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 493 | 527 | 12.364404 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 392 | 426 | 11.695765 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39620.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_048494894.1 | pentatricopeptide repeat-containing protein At2g39620 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O80647 | Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803N092 | Pentatricopeptide repeat-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24434 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033616 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g037410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19889, Sbi_jg44652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17347 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024039 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63698, Sgl68200 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000021560, gene:ENSEOMG00000050726 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0009780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175040 |
| Apiaceae | Apium graveolens | 1 | Ag10G01116 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000840 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.46.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G28911 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016248m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g21880.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g025470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0739 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g07690 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g02680 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05287 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1452, evm.TU.LG05.1977 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1706 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26022 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7668 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4515, nbisL1-mrna-4516 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.357 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9474 |
| Salicaceae | Populus euphratica | 1 | populus_peu06399 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613496, gene-LOC132615578 |
| Solanaceae | Solanum chilense | 1 | SOLCI007470700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015926 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2306_chr01_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0915 |
| Zosteraceae | Zostera marina | 1 | Zosma06g27790.v3.1 |