Basic Information
Locus ID:
gene_24398
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 12791634 | 12798200 | + | gene_24398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 42,752.09 Da | 42.50 | 80.16 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 45 | 356 | 9.89E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 20 | 297 | 2.8E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 122 | 157 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 32 | 70 | 59.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 288 | 18.0 | IPR001680 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 361 | 373 | - | IPR018247 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_021864817.1 | autophagy-related protein 18c-like [Spinacia oleracea] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R198 | Autophagy-related protein 18c OS=Spinacia oleracea OX=3562 GN=SOVF_118040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology