Basic Information
Locus ID:
gene_243
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 4168318 | 4176203 | - | gene_243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 65,128.14 Da | 52.00 | 92.66 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 19 | 59 | 7.4E-21 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 78 | 124 | 7.8E-23 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 57 | 3.66E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 81 | 549 | 1.96E-32 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 57 | 8.8E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 58 | 583 | 4.6E-173 | IPR032675 |
| SMART | SM00256 | fbox_2 | 21 | 62 | 0.0018 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 443 | 466 | 36.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 492 | 516 | 67.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 116 | 140 | 710.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 141 | 166 | 18.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 325 | 348 | 100.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 383 | 407 | 11.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010686279.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9ARE6 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology