Basic Information
Locus ID:
gene_24269
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 9909039 | 9920720 | + | gene_24269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 102,882.40 Da | 33.08 | 96.41 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 620 | 881 | 4.05916E-97 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 618 | 877 | 3.2E-48 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 113 | 172 | 9.2E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 59 | 409 | 1.6E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 600 | 898 | 2.02E-80 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 690 | 900 | 4.9E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 587 | 689 | 9.3E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 184 | 390 | 1.1E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 183 | 8.2E-39 | IPR032675 |
| SMART | SM00220 | serkin_6 | 614 | 882 | 7.2E-43 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 614 | 882 | 40.597809 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 734 | 746 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 620 | 642 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49760.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021866985.1 | probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 [Spinacia oleracea] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QHR6 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_184090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology