Basic Information
Locus ID:
gene_24215
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
UPF0496 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 8952118 | 8957099 | + | gene_24215 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 76,667.11 Da | 43.96 | 97.84 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 58 | 306 | 1.11945E-77 | IPR000092 |
| Pfam | PF05055 | Protein of unknown function (DUF677) | 351 | 691 | 7.8E-112 | IPR007749 |
| Pfam | PF00348 | Polyprenyl synthetase | 60 | 299 | 7.6E-57 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 36 | 306 | 6.48E-87 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 27 | 318 | 3.2E-101 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 111 | 127 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 246 | 258 | - | IPR033749 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 329 | - | - |
| Coils | Coil | Coil | 509 | 536 | - | - |
| Coils | Coil | Coil | 624 | 644 | - | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 38 | 310 | 0.0 | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 38 | 310 | 0.0 | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_021718507.1 | UPF0496 protein At4g34320-like [Chenopodium quinoa] | 0 |
| Q94ID7 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QPY5 | UPF0496 protein OS=Spinacia oleracea OX=3562 GN=SOVF_154780 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology