Basic Information
Locus ID:
gene_24209
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 8818965 | 8824713 | + | gene_24209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 59,300.89 Da | 59.45 | 62.87 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 148 | 200 | 1.03677E-27 | - |
| Pfam | PF00412 | LIM domain | 148 | 202 | 5.3E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 297 | 517 | 7.2E-105 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 174 | 229 | 2.93E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 141 | 173 | 3.5E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 140 | 206 | 2.2E-15 | - |
| SMART | SM00132 | lim_4 | 147 | 199 | 1.0E-12 | IPR001781 |
| SMART | SM00726 | uim | 86 | 105 | 0.095 | IPR003903 |
| SMART | SM00726 | uim | 45 | 64 | 110.0 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 86 | 105 | 9.961906 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 146 | 206 | 12.1276 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 148 | 182 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 466 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021847823.1 | protein DA1-related 1 isoform X1 [Spinacia oleracea] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RQ70 | LIM zinc-binding domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_041660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology