Basic Information
Locus ID:
gene_24169
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 8058214 | 8070190 | + | gene_24169 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 76,725.31 Da | 47.52 | 70.89 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 77 | 131 | 4.15385E-4 | IPR001623 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 513 | 560 | 1.4E-9 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 515 | 571 | 5.23E-12 | IPR036638 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 71 | 142 | 2.09E-7 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 75 | 155 | 4.0E-6 | IPR036869 |
| Gene3D | G3DSA:4.10.280.10 | - | 508 | 570 | 3.3E-13 | IPR036638 |
| SMART | SM00353 | finulus | 517 | 566 | 6.0E-11 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 511 | 560 | 15.230653 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 351 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68810.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 0 |
| RefSeq | XP_021713992.1 | uncharacterized protein LOC110682071 isoform X1 [Chenopodium quinoa] | 0 |
| Q9S7Y1 | Transcription factor bHLH30 OS=Arabidopsis thaliana OX=3702 GN=BHLH30 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KX97 | J domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology