Basic Information
Locus ID:
gene_24157
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Receptor-like cytosolic serine threonine-protein kinase RBK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 7903474 | 7911772 | + | gene_24157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 78,038.32 Da | 45.46 | 88.60 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 179 | 444 | 6.4E-37 | IPR001245 |
| Pfam | PF00515 | Tetratricopeptide repeat | 673 | 704 | 1.0E-7 | IPR001440 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 155 | 445 | 2.46E-68 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 577 | 715 | 5.93E-16 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 154 | 253 | 2.3E-21 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 503 | 716 | 3.3E-19 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 255 | 453 | 1.9E-57 | - |
| SMART | SM00028 | tpr_5 | 672 | 705 | 4.8E-7 | IPR019734 |
| SMART | SM00220 | serkin_6 | 175 | 445 | 1.3E-16 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 175 | 445 | 32.612099 | IPR000719 |
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 672 | 704 | 9.32794 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 672 | 705 | 12.5379 | IPR019734 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 297 | 309 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 181 | 203 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 71 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65530.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021728199.1 | receptor-like cytosolic serine/threonine-protein kinase RBK1 [Chenopodium quinoa] | 0 |
| Q8H1D6 | Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana OX=3702 GN=RBK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A498HWZ9 | Protein kinase domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_021285 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology