Basic Information
Locus ID:
gene_23976
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 5142737 | 5150096 | + | gene_23976 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 71,144.02 Da | 50.07 | 93.58 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 45 | 1.7E-5 | IPR001810 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 567 | 614 | 4.2E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 78 | 1.7E-10 | IPR036047 |
| SUPERFAMILY | SSF57850 | RING/U-box | 560 | 616 | 1.03E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 543 | 620 | 1.6E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 45 | 4.0E-6 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 138 | 339 | 1.1E-15 | IPR017451 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 569 | 609 | 11.161508 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24204.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021714396.1 | RNA-binding protein MEX3B-like [Chenopodium quinoa] | 0 |
| Q0WS06 | E3 ubiquitin-protein ligase APD1 OS=Arabidopsis thaliana OX=3702 GN=APD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZDJ9 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_10790, gene_15721, gene_16719, gene_16720, gene_16746 ... |