Basic Information
Locus ID:
gene_23954
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 4772700 | 4834258 | + | gene_23954 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 523,456.59 Da | 43.70 | 86.20 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2643 | 2763 | 4.29353E-4 | - |
| CDD | cd16119 | UBX_UBXN6 | 4600 | 4680 | 6.0107E-22 | - |
| CDD | cd09212 | PUB | 4412 | 4496 | 1.06913E-22 | - |
| Pfam | PF00789 | UBX domain | 4597 | 4649 | 5.8E-6 | IPR001012 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 383 | 8.1E-66 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2245 | 2388 | 1.8E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2006 | 2163 | 4.2E-12 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3152 | 3443 | 3.1E-13 | IPR009543 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3694 | 3824 | 6.9E-8 | IPR031645 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 576 | 802 | 3.9E-35 | IPR031642 |
| Pfam | PF09409 | PUB domain | 4415 | 4489 | 1.3E-17 | IPR018997 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 4.1E-31 | IPR026854 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2622 | 2745 | 6.16E-5 | IPR035892 |
| SUPERFAMILY | SSF143503 | PUG domain-like | 4413 | 4493 | 1.16E-17 | IPR036339 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4566 | 4679 | 2.58E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 4589 | 4682 | 1.7E-6 | - |
| Gene3D | G3DSA:1.20.58.2190 | - | 4409 | 4498 | 3.3E-17 | - |
| SMART | SM00580 | PGNneu | 4414 | 4481 | 1.9E-17 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 4595 | 4679 | 13.298904 | IPR001012 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2618 | 2767 | 9.384844 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4266 | 4295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4257 | 4297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4209 | 4236 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZU93 | Plant UBX domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUX2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology