Basic Information
Locus ID:
gene_23938
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
CMT1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 4443375 | 4450269 | + | gene_23938 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 92,648.80 Da | 40.70 | 78.70 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 367 | 422 | 4.31772E-29 | - |
| Pfam | PF01426 | BAH domain | 94 | 196 | 5.1E-12 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 431 | 791 | 7.8E-29 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 367 | 421 | 5.0E-12 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 353 | 426 | 2.92E-14 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 264 | 791 | 7.62E-73 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 267 | 809 | 9.0E-245 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 24 | 191 | 5.9E-47 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 585 | 758 | 9.0E-245 | - |
| SMART | SM00298 | chromo_7 | 366 | 425 | 2.2E-11 | IPR000953 |
| SMART | SM00439 | BAH_4 | 88 | 206 | 8.6E-19 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 265 | 799 | 41.936848 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 367 | 420 | 15.507801 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 88 | 206 | 18.42424 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 390 | 410 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 480 | 494 | 1.3E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 266 | 282 | 1.3E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 526 | 539 | 1.3E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 248 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_010666617.2 | putative DNA (cytosine-5)-methyltransferase CMT1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B4R8 | DNA (cytosine-5-)-methyltransferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_003270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology