Basic Information
Locus ID:
gene_23920
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
CDPK-related kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 4116451 | 4123145 | + | gene_23920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 66,294.24 Da | 46.20 | 81.65 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 140 | 402 | 1.59254E-137 | - |
| Pfam | PF00069 | Protein kinase domain | 141 | 403 | 1.4E-73 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 137 | 436 | 7.69E-84 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 434 | 584 | 6.1E-17 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 421 | 512 | 1.3E-17 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 428 | 582 | 1.3E-17 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 134 | 230 | 5.2E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 231 | 414 | 6.2E-63 | - |
| SMART | SM00220 | serkin_6 | 141 | 403 | 2.6E-100 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 141 | 403 | 51.452721 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 147 | 173 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 265 | 277 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50530.1 | CDPK-related kinase. CDPK-related kinase | 0 |
| RefSeq | XP_021854678.1 | CDPK-related kinase 5 isoform X2 [Spinacia oleracea] | 0 |
| Q9SCS2 | CDPK-related kinase 5 OS=Arabidopsis thaliana OX=3702 GN=CRK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QMB1 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_162870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology