halophFGD

Basic Information

Locus ID: gene_23890

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: Guanine nucleotide-binding protein subunit beta-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_4_Chr_5	3709041	3711078	+	gene_23890

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.75	38,813.18 Da	40.76	81.32	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	7	350	8.17203E-82	-
Pfam	PF00400	WD domain, G-beta repeat	243	267	0.19	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	100	136	7.2E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	140	184	8.3E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	11	43	0.078	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	326	350	8.4E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	54	90	2.8E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	191	226	2.5E-9	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	9	354	7.79E-69	IPR036322
Gene3D	G3DSA:2.130.10.10	-	6	353	8.9E-113	IPR015943
SMART	SM00320	WD40_4	138	184	1.5E-7	IPR001680
SMART	SM00320	WD40_4	4	44	0.22	IPR001680
SMART	SM00320	WD40_4	97	136	2.3E-9	IPR001680
SMART	SM00320	WD40_4	313	350	0.0053	IPR001680
SMART	SM00320	WD40_4	230	267	7.1	IPR001680
SMART	SM00320	WD40_4	187	226	3.3E-11	IPR001680
SMART	SM00320	WD40_4	51	90	4.2E-7	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	326	356	10.942887	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	194	227	12.815584	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	150	184	10.811958	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	58	99	14.518635	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	194	227	15.554599	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	150	193	13.148488	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	104	136	12.235586	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	318	356	10.337415	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	58	93	11.391954	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	11	46	9.004632	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	104	136	14.819399	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	77	91	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	213	227	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	213	227	1.3E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	171	185	1.3E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	123	137	1.3E-8	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	284	307	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14753 (guanine nucleotide-binding protein subunit beta-2-like 1 protein)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G18080.1	Transducin/WD40 repeat-like superfamily protein. Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.
RefSeq	XP_047094789.1	guanine nucleotide-binding protein subunit beta-like protein A [Lolium rigidum]
Swiss-Prot	P93340	Small ribosomal subunit protein RACK1 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1
TrEMBL	A0A804ITP5	(wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=GSMUA_131340.1 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13319, jg13320, jg27000
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19983, gene_23890
Amaranthaceae	Atriplex hortensis	1	Ah002270
Amaranthaceae	Beta vulgaris	1	BVRB_5g111970
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg32204, Sbi_jg57196
Amaranthaceae	Salicornia europaea	1	Seu_jg24934
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022192
Amaranthaceae	Suaeda glauca	2	Sgl53978, Sgl59303
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000004264, gene:ENSEOMG00000021259 ... gene:ENSEOMG00000024746
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0014830, CQ.Regalona.r1.5BG0015800
Anacardiaceae	Pistacia vera	1	pistato.v30150310
Apiaceae	Apium graveolens	2	Ag11G03770, Ag5G00067
Arecaceae	Cocos nucifera	5	COCNU_02G005670, COCNU_02G005690, COCNU_06G008140 ... scaffold001198G000060, scaffold012197G000050
Arecaceae	Phoenix dactylifera	5	gene-LOC103716866, gene-LOC103719002, gene-LOC103722987 ... gene-LOC103723475, gene-LOC120110522
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3204.V1.1, AsparagusV1_05.750.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G23993, Ftri6G09016
Brassicaceae	Arabidopsis thaliana	3	AT1G18080.1, AT1G48630.1, AT3G18130.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10008183m.g.v1.0, Thhalv10011646m.g.v1.0 ... Thhalv10021128m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g16100.v2.2, Sp1g35600.v2.2, Sp3g16240.v2.2
Brassicaceae	Brassica nigra	6	BniB01g046490.2N, BniB03g007440.2N, BniB03g027900.2N ... BniB04g032580.2N, BniB04g062020.2N, BniB07g007110.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2865
Casuarinaceae	Casuarina glauca	1	Cgl03G3013
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g02150
Dunaliellaceae	Dunaliella salina	1	Dusal.0241s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g00270
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.268
Plantaginaceae	Plantago ovata	3	Pov_00018619, Pov_00033244, Pov_00033291
Plumbaginaceae	Limonium bicolor	4	Lb3G16516, Lb3G16524, Lb5G29571, Lb6G29907
Poaceae	Echinochloa crus-galli	6	AH02.2797, AH05.1476, BH02.2881, BH05.1645, CH02.3653 ... CH05.1854
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0029020, gene-QOZ80_1BG0079240 ... gene-QOZ80_5AG0364080, gene-QOZ80_5BG0412180
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0084340.1, HORVU.MOREX.r3.3HG0280990.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015641, gene-QYE76_054631
Poaceae	Oryza coarctata	4	Oco01G017580, Oco02G017820, Oco09G016160, Oco10G015950
Poaceae	Oryza sativa	2	LOC_Os01g49290.1, LOC_Os05g47890.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G234800, gene-BS78_09G227600
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0503641, Pt_Chr0602392, Pt_Chr0602403
Poaceae	Sporobolus alterniflorus	8	Chr01G015230, Chr02G012360, Chr03G013770, Chr05G021280 ... Chr06G022680, Chr12G021620, Chr18G014700, Chr22G002000
Poaceae	Thinopyrum elongatum	2	Tel1E01G615800, Tel3E01G441700
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG055510, gene_TRIDC1BG063850 ... gene_TRIDC3AG039410, gene_TRIDC3BG044470
Poaceae	Triticum aestivum	6	TraesCS1A02G378000.1, TraesCS1B02G398800.1 ... TraesCS1D02G385000.1, TraesCS3A02G263900.1, TraesCS3B02G297300.1, TraesCS3D02G264000.1
Poaceae	Zea mays	2	Zm00001eb294990_P001, Zm00001eb342960_P001
Poaceae	Zoysia japonica	4	nbis-gene-12605, nbis-gene-13743, nbis-gene-24932 ... nbis-gene-26144
Poaceae	Zoysia macrostachya	5	Zma_g10901, Zma_g10902, Zma_g27334, Zma_g28749, Zma_g8453
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.2251, evm.TU.LG05.754, evm.TU.LG14.1424 ... evm.TU.LG25.572
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g19330, gene.Posoc04g03680
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60404.5, evm.TU.Scaffold_11_RagTag.642 ... evm.TU.Scaffold_4_RagTag.715
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14300, nbisL1-mrna-28642
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3231, nbisL1-mrna-4299
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12332, nbisL1-mrna-1651
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000061l.4
Rhizophoraceae	Kandelia obovata	2	Maker00000606, Maker00008692
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14440, nbisL1-mrna-948
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19212, nbisL1-mrna-8389
Salicaceae	Populus euphratica	2	populus_peu28285, populus_peu29736
Solanaceae	Lycium barbarum	2	gene-LOC132599878, gene-LOC132633235
Solanaceae	Solanum chilense	2	SOLCI000423000, SOLCI006758900
Solanaceae	Solanum pennellii	3	gene-LOC107007696, gene-LOC107014559, gene-LOC107023263
Tamaricaceae	Reaumuria soongarica	1	gene_12652
Tamaricaceae	Tamarix chinensis	2	TC05G1040, TC09G1699
Zosteraceae	Zostera marina	2	Zosma04g05450.v3.1, Zosma05g32250.v3.1