Basic Information
Locus ID:
gene_23843
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 3084811 | 3089039 | + | gene_23843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 56,215.48 Da | 49.33 | 104.87 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 46 | 7.6E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 51 | 1.7E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 149 | 303 | 1.84E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 385 | 6.2E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 54 | 2.8E-5 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 0.0063 | IPR001810 |
| Coils | Coil | Coil | 66 | 86 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41840.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_010693135.2 | uncharacterized protein LOC104906115 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FJ30 | Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana OX=3702 GN=At5g41840 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0K9QA55 | F-box domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_207720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology