Basic Information
Locus ID:
gene_23782
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 2279043 | 2282976 | + | gene_23782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 54,836.88 Da | 45.94 | 72.62 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 219 | 478 | 8.29172E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 348 | 3.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 393 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 265 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 443 | 478 | 6.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 179 | 479 | 1.1E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 143 | 480 | 6.6E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 225 | 265 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 222 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 305 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 393 | 8.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 348 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 439 | 478 | 6.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 436 | 170.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 358 | 402 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 274 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 446 | 479 | 11.73468 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 316 | 348 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 316 | 357 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 446 | 479 | 14.184453 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 465 | 479 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 380 | 394 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 184 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_010690812.2 | protein FIZZY-RELATED 3 [Beta vulgaris subsp. vulgaris] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S028 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology