Basic Information
Locus ID:
gene_23776
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 2142641 | 2146177 | + | gene_23776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 44,105.24 Da | 91.12 | 57.83 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 200 | 244 | 9.09196E-23 | - |
| Pfam | PF13639 | Ring finger domain | 199 | 241 | 2.0E-9 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 284 | 390 | 6.6E-42 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 12 | 42 | 2.4E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 180 | 247 | 6.06E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 247 | 6.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 200 | 240 | 3.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 200 | 241 | 11.972923 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 393 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_021769028.1 | probable E3 ubiquitin-protein ligase RHC2A [Chenopodium quinoa] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7I3I8 | RING-type E3 ubiquitin transferase OS=Camellia sinensis OX=4442 GN=HYC85_000799 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology