Basic Information
Locus ID:
gene_23647
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
prolyl 4-hydroxylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_4_Chr_5 | 334800 | 344456 | + | gene_23647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 48,507.61 Da | 37.83 | 72.92 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13640 | 2OG-Fe(II) oxygenase superfamily | 301 | 419 | 1.3E-20 | IPR044862 |
| SUPERFAMILY | SSF51316 | Mss4-like | 61 | 91 | 2.27E-5 | IPR011057 |
| Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 213 | 420 | 1.9E-80 | - |
| SMART | SM00702 | p4hc | 221 | 419 | 1.8E-67 | IPR006620 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 297 | 420 | 12.888339 | IPR005123 |
| ProSiteProfiles | PS50819 | Intein DOD-type homing endonuclease domain profile. | 81 | 175 | 8.582314 | IPR004042 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 149 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66060.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein. | 0 |
| RefSeq | XP_010683036.2 | probable prolyl 4-hydroxylase 10 [Beta vulgaris subsp. vulgaris] | 0 |
| F4JZ24 | Probable prolyl 4-hydroxylase 10 OS=Arabidopsis thaliana OX=3702 GN=P4H10 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2R6S2S6 | Prolyl 4-hydroxylase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01096 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology