halophFGD

Basic Information

Locus ID: gene_23546

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX MLL subfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_2_Chr_2	43525906	43540210	+	gene_23546

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.56	117,282.32 Da	45.63	69.64	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10518	SET_SETD1-like	880	1029	2.05828E-74	-
CDD	cd15495	PHD_ATX3_4_5_like	599	645	5.36089E-22	IPR042011
CDD	cd15517	PHD_TCF19_like	423	473	1.99076E-9	-
CDD	cd15663	ePHD_ATX3_4_5_like	654	765	7.48707E-65	IPR041955
Pfam	PF13832	PHD-zinc-finger like domain	653	765	3.6E-27	-
Pfam	PF13831	PHD-finger	612	646	2.0E-13	-
Pfam	PF00856	SET domain	902	1007	1.5E-18	IPR001214
Pfam	PF00628	PHD-finger	422	476	2.9E-9	IPR019787
Pfam	PF00855	PWWP domain	237	334	2.6E-15	IPR000313
SUPERFAMILY	SSF63748	Tudor/PWWP/MBT	232	336	1.93E-19	-
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	598	662	4.53E-10	IPR011011
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	419	479	1.53E-10	IPR011011
SUPERFAMILY	SSF82199	SET domain	884	1030	1.44E-45	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	414	478	9.2E-11	IPR013083
Gene3D	G3DSA:2.170.270.10	SET domain	863	1033	1.8E-51	-
Gene3D	G3DSA:2.30.30.140	-	226	344	6.6E-21	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	650	768	1.7E-15	IPR013083
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	592	649	7.6E-11	IPR013083
SMART	SM00317	set_7	891	1014	1.2E-33	IPR001214
SMART	SM00293	PWWP_4	237	306	0.003	IPR000313
SMART	SM00508	PostSET_3	1017	1033	0.0023	IPR003616
SMART	SM00249	PHD_3	422	474	1.1E-10	IPR001965
SMART	SM00249	PHD_3	710	766	0.061	IPR001965
SMART	SM00249	PHD_3	599	646	0.0023	IPR001965
ProSiteProfiles	PS50868	Post-SET domain profile.	1017	1033	9.855059	IPR003616
ProSiteProfiles	PS51805	Extended PHD (ePHD) domain profile.	651	766	30.983709	IPR034732
ProSiteProfiles	PS50016	Zinc finger PHD-type profile.	420	476	9.507799	IPR019787
ProSiteProfiles	PS50812	PWWP domain profile.	239	308	10.124414	IPR000313
ProSiteProfiles	PS50280	SET domain profile.	891	1008	18.648596	IPR001214
ProSiteProfiles	PS50016	Zinc finger PHD-type profile.	597	648	8.8047	IPR019787
ProSiteProfiles	PS51566	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	3	1033	406.783691	IPR025780
ProSitePatterns	PS01359	Zinc finger PHD-type signature.	600	645	-	IPR019786
MobiDBLite	mobidb-lite	consensus disorder prediction	55	94	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	56	87	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11380 (NuA3 HAT complex component NTO1)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G61740.2	SET domain protein 14.
RefSeq	XP_010667363.1	histone-lysine N-methyltransferase ATX3 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	Q9M364	Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana OX=3702 GN=ATX3 PE=2 SV=2
TrEMBL	A0A0K9QGG1	Histone-lysine N-methyltransferase ATX3 OS=Spinacia oleracea OX=3562 GN=SOVF_187590 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg13889, jg26921
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23546, gene_3304
Amaranthaceae	Atriplex hortensis	2	Ah018632, Ah022859
Amaranthaceae	Beta vulgaris	2	BVRB_1g003150, BVRB_3g052080
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg15093, Sbi_jg3958, Sbi_jg49172, Sbi_jg55908
Amaranthaceae	Salicornia europaea	2	Seu_jg26405, Seu_jg6071
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000578, GOSA_00000580, GOSA_00020060
Amaranthaceae	Suaeda glauca	5	Sgl01350, Sgl06427, Sgl06504, Sgl10912, Sgl16266
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000001146, gene:ENSEOMG00000015979 ... gene:ENSEOMG00000030048, gene:ENSEOMG00000035628, gene:ENSEOMG00000046619, gene:ENSEOMG00000047655
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0002130, CQ.Regalona.r1.2BG0026180 ... CQ.Regalona.r1.3AG0005050, CQ.Regalona.r1.3BG0005060
Anacardiaceae	Pistacia vera	2	pistato.v30005780, pistato.v30164460
Apiaceae	Apium graveolens	4	Ag2G02092, Ag3G02040, Ag6G00235, Ag6G00261
Arecaceae	Cocos nucifera	3	COCNU_03G013090, COCNU_06G002700, COCNU_14G000250
Arecaceae	Phoenix dactylifera	3	gene-LOC103702976, gene-LOC103713329, gene-LOC120108262
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2598.V1.1, AsparagusV1_05.2829.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G29884, Ftri18G17751, Ftri5G04961
Brassicaceae	Arabidopsis thaliana	3	AT3G61740.1, AT4G27910.1, AT5G53430.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10005766m.g.v1.0, Thhalv10012524m.g.v1.0 ... Thhalv10024299m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp5g01630.v2.2, Sp6g15560.v2.2, Sp7g25880.v2.2
Brassicaceae	Brassica nigra	2	BniB02g031770.2N, BniB06g052810.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1266, Ceq09G1634
Casuarinaceae	Casuarina glauca	2	Cgl02G1307, Cgl09G1768
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g12460, gene.Cymno02g12610
Dunaliellaceae	Dunaliella salina	1	Dusal.0308s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g25870, gene.Thate07g15770
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11730, nbisL1-mrna-6156, nbisL1-mrna-9536
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.706, evm.TU.LG05.977, evm.TU.LG09.503
Plantaginaceae	Plantago ovata	2	Pov_00017875, Pov_00041147
Plumbaginaceae	Limonium bicolor	2	Lb1G03663, Lb1G04196
Poaceae	Echinochloa crus-galli	6	AH02.178, AH02.2566, BH02.173, BH02.2667, CH02.203 ... CH02.3864
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0001680, gene-QOZ80_1AG0026990 ... gene-QOZ80_1BG0050150, gene-QOZ80_1BG0077220, gene-QOZ80_1BG0077230
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0244900.1, HORVU.MOREX.r3.3HG0276610.1
Poaceae	Lolium multiflorum	1	gene-QYE76_051349
Poaceae	Oryza coarctata	6	Oco01G005160, Oco01G005170, Oco01G016110, Oco02G005210 ... Oco02G005220, Oco02G016360
Poaceae	Oryza sativa	3	LOC_Os01g11952.1, LOC_Os01g11960.1, LOC_Os01g46700.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G015300, gene-BS78_03G215700
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0404342, Pt_Chr0503283, Pt_Chr0604993
Poaceae	Sporobolus alterniflorus	9	Chr02G013960, Chr03G000190, Chr03G012330, Chr05G019840 ... Chr08G000260, Chr08G012610, Chr10G013620, Chr14G016850, Chr21G015780
Poaceae	Thinopyrum elongatum	2	Tel3E01G242900, Tel3E01G401900
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG019070, gene_TRIDC3AG035470 ... gene_TRIDC3BG023000, gene_TRIDC3BG039820
Poaceae	Triticum aestivum	6	TraesCS3A02G143300.2, TraesCS3A02G237200.2 ... TraesCS3B02G161800.3, TraesCS3B02G265800.1, TraesCS3D02G144300.2, TraesCS3D02G237600.2
Poaceae	Zea mays	4	Zm00001eb119830_P001, Zm00001eb158060_P001 ... Zm00001eb338670_P001, Zm00001eb359430_P003
Poaceae	Zoysia japonica	4	nbis-gene-24332, nbis-gene-25942, nbis-gene-29050 ... nbis-gene-32660
Poaceae	Zoysia macrostachya	4	Zma_g10781, Zma_g7229, Zma_g8343, Zma_g9554
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1973, evm.TU.LG11.1663, evm.TU.LG19.1278 ... evm.TU.LG24.1277
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g23240, gene.Posoc08g13740
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.60378.4, evm.TU.60378.5, evm.TU.Scaffold_1_RagTag.539 ... evm.TU.Scaffold_9_RagTag.603
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-21614, nbisL1-mrna-7504
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-2559, nbisL1-mrna-937
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-5647, nbisL1-mrna-7401
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.206, evm.TU.utg000012l.389
Rhizophoraceae	Kandelia obovata	2	Maker00011473, Maker00017799
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1703, nbisL1-mrna-8408
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-5437, nbisL1-mrna-746
Salicaceae	Populus euphratica	4	populus_peu27564, populus_peu28040, populus_peu29483 ... populus_peu31561
Solanaceae	Lycium barbarum	3	gene-LOC132631391, gene-LOC132632069, gene-LOC132645451
Solanaceae	Solanum chilense	3	SOLCI000802600, SOLCI001699900, SOLCI004966200
Solanaceae	Solanum pennellii	3	gene-LOC107008267, gene-LOC107013606, gene-LOC107015255
Tamaricaceae	Reaumuria soongarica	3	gene_5165, gene_731, gene_9968
Tamaricaceae	Tamarix chinensis	4	TC03G1956, TC06G1518, TC08G1398, TC09G2333
Zosteraceae	Zostera marina	2	Zosma01g14670.v3.1, Zosma06g08050.v3.1