Basic Information
Locus ID:
gene_23499
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
heterogeneous nuclear ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 42815453 | 42826852 | + | gene_23499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 110,983.21 Da | 38.87 | 73.52 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 633 | 705 | 8.50736E-24 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 713 | 778 | 4.6E-9 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 808 | 877 | 1.6E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 633 | 703 | 1.1E-23 | IPR000504 |
| Pfam | PF01565 | FAD binding domain | 13 | 146 | 4.0E-17 | IPR006094 |
| Pfam | PF04030 | D-arabinono-1,4-lactone oxidase | 350 | 476 | 2.4E-8 | IPR007173 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 803 | 907 | 4.43E-20 | IPR035979 |
| SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 4 | 188 | 6.07E-36 | IPR036318 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 629 | 796 | 9.46E-40 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 798 | 900 | 7.0E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.2520 | - | 346 | 447 | 3.4E-5 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 541 | 711 | 2.4E-31 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 712 | 792 | 1.3E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.465.10 | - | 68 | 188 | 2.6E-30 | IPR016169 |
| SMART | SM00360 | rrm1_1 | 632 | 705 | 1.5E-28 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 807 | 880 | 1.0E-15 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 632 | 705 | 2.8E-5 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 712 | 789 | 2.1E-10 | IPR000504 |
| TIGRFAM | TIGR01677 | pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase | 2 | 477 | 1.6E-224 | IPR010030 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 806 | 884 | 15.016313 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 631 | 709 | 20.235266 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 711 | 793 | 12.406837 | IPR000504 |
| ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 6 | 189 | 21.411266 | IPR016166 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 1002 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 619 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46760.1 | D-arabinono-1,4-lactone oxidase family protein. | 0 |
| RefSeq | XP_021767749.1 | heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Chenopodium quinoa] | 0 |
| O81032 | Probable L-gulonolactone oxidase 6 OS=Arabidopsis thaliana OX=3702 GN=GULLO6 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6A6MN42 | L-gulonolactone oxidase OS=Hevea brasiliensis OX=3981 GN=GH714_038322 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology