Basic Information
Locus ID:
gene_23475
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Serine threonine-protein kinase-like protein CCR4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 42500611 | 42505274 | + | gene_23475 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 86,861.80 Da | 50.79 | 84.00 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 493 | 775 | 6.57243E-91 | - |
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 249 | 274 | 2.6E-5 | - |
| Pfam | PF00069 | Protein kinase domain | 488 | 770 | 3.7E-42 | IPR000719 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 127 | 316 | 1.31E-17 | IPR009091 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 469 | 773 | 1.48E-73 | IPR011009 |
| Gene3D | G3DSA:2.130.10.30 | - | 79 | 317 | 2.2E-22 | IPR009091 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 575 | 786 | 1.2E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 454 | 574 | 3.1E-29 | - |
| SMART | SM00220 | serkin_6 | 487 | 773 | 5.7E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 487 | 777 | 37.290451 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 621 | 633 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 493 | 515 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_021748016.1 | serine/threonine-protein kinase-like protein CCR4 [Chenopodium quinoa] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M511 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology