Basic Information
Locus ID:
gene_23419
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 41666211 | 41678159 | + | gene_23419 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 143,018.45 Da | 32.38 | 95.78 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 46 | 157 | 2.8051E-17 | IPR001480 |
| CDD | cd13132 | MATE_eukaryotic | 852 | 1275 | 1.54672E-152 | IPR045069 |
| CDD | cd14066 | STKc_IRAK | 504 | 775 | 4.7529E-92 | - |
| Pfam | PF01453 | D-mannose binding lectin | 86 | 172 | 8.8E-15 | IPR001480 |
| Pfam | PF00069 | Protein kinase domain | 502 | 770 | 6.0E-51 | IPR000719 |
| Pfam | PF08276 | PAN-like domain | 336 | 398 | 1.9E-5 | IPR003609 |
| Pfam | PF00954 | S-locus glycoprotein domain | 232 | 308 | 8.3E-6 | IPR000858 |
| Pfam | PF01554 | MatE | 1095 | 1193 | 2.5E-18 | IPR002528 |
| Pfam | PF01554 | MatE | 862 | 1022 | 1.1E-33 | IPR002528 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 84 | 203 | 2.49E-23 | IPR036426 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 165 | 267 | 3.78E-6 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 481 | 773 | 4.18E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 573 | 787 | 2.3E-60 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 157 | 279 | 7.2E-12 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 37 | 156 | 6.6E-13 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 466 | 572 | 9.7E-31 | - |
| SMART | SM00220 | serkin_6 | 498 | 776 | 2.7E-31 | IPR000719 |
| SMART | SM00108 | blect_4 | 47 | 157 | 3.0E-15 | IPR001480 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 862 | 1193 | 3.7E-47 | IPR002528 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 333 | 414 | 7.216006 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 498 | 776 | 36.993637 | IPR000719 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 158 | 276 | 10.011047 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 40 | 156 | 13.092835 | IPR001480 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 504 | 526 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 620 | 632 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 843 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34300.1 | lectin protein kinase family protein. | 0 |
| RefSeq | XP_021760474.1 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Chenopodium quinoa] | 0 |
| Q9XID3 | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana OX=3702 GN=At1g34300 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R054 | Protein DETOXIFICATION OS=Spinacia oleracea OX=3562 GN=SOVF_121370 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12158, jg23214, jg23216, jg23217, jg23218 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_23417, gene_23418, gene_23419 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah022619, Ah022629, Ah022634 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g000640 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg29410, Sbi_jg29411, Sbi_jg3651 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6327, Seu_jg6328 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000798, GOSA_00000799 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl12008, Sgl12009, Sgl12010, Sgl15985, Sgl15986 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000013109, gene:ENSEOMG00000033957 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0000670, CQ.Regalona.r1.1AG0000680 ... |
| Apiaceae | Apium graveolens | 1 | Ag3G01752 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G019610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702673 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G33827 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34300.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10006801m.g.v1.0, Thhalv10027652m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g29520.v2.2, Sp6g07970.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB04g053120.2N, BniB04g058220.2N, BniB07g015560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1538 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1673 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g13860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12218, nbisL1-mrna-5136, nbisL1-mrna-5137 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1486 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021786, Pov_00037734 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.514, BH01.224 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0209090, gene-QOZ80_3BG0254220 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0114830.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060339 |
| Poaceae | Oryza coarctata | 2 | Oco05G028440, Oco06G029470 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g62180.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G017900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0106103, Pt_Chr0106153, Pt_Chr0106154 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G032230, Chr07G031270, Chr12G032310 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G805000, Tel5E01G805200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG052940, gene_TRIDC5BG077590 |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G353100.1.cds1, TraesCS4A02G353300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb063900_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15608, nbis-gene-16702 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g2410, Zma_g2411, Zma_g91 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.1975, evm.TU.LG04.1976, evm.TU.LG06.356 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g17110 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.1286, evm.TU.Scaffold_7_RagTag.1287 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-18473, nbisL1-mrna-18474, nbisL1-mrna-18527 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1572, nbisL1-mrna-2256, nbisL1-mrna-7762 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13258, nbisL1-mrna-13259, nbisL1-mrna-18048 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.122, add.evm.TU.utg000002l.123 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011907 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-20319, nbisL1-mrna-20320, nbisL1-mrna-20541 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18495, nbisL1-mrna-18496, nbisL1-mrna-18702 |
| Salicaceae | Populus euphratica | 1 | populus_peu16662 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627094 |
| Solanaceae | Solanum chilense | 1 | SOLCI000041400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005025 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_649, gene_650 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2311, TC03G2313 |