Basic Information
Locus ID:
gene_2338
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 12677069 | 12713369 | - | gene_2338 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 131,304.80 Da | 44.47 | 79.03 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 196 | 524 | 2.54786E-168 | - |
| CDD | cd00121 | MATH | 55 | 178 | 5.5479E-40 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 623 | 875 | 1.0E-74 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 198 | 519 | 1.1E-46 | IPR001394 |
| Pfam | PF00917 | MATH domain | 60 | 180 | 1.3E-18 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 885 | 1096 | 1.0E-56 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 51 | 186 | 3.11E-42 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 193 | 551 | 1.08E-97 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 194 | 5.8E-53 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 801 | 898 | 3.1E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 195 | 523 | 1.4E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 684 | 800 | 1.3E-42 | - |
| SMART | SM00061 | math_3 | 55 | 159 | 1.4E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 53 | 178 | 39.210091 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 198 | 522 | 40.646873 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 438 | 455 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 199 | 214 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 535 | 558 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010677617.1 | ubiquitin C-terminal hydrolase 12 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9CRZ2 | ubiquitinyl hydrolase 1 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology