Basic Information
Locus ID:
gene_23368
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 40866723 | 40877024 | + | gene_23368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 121,881.69 Da | 55.33 | 71.69 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 555 | 859 | 1.20295E-129 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 556 | 858 | 4.3E-44 | IPR001394 |
| Pfam | PF01753 | MYND finger | 83 | 120 | 1.8E-8 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 555 | 860 | 4.91E-83 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 78 | 122 | 1.92E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 73 | 123 | 4.8E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 549 | 871 | 2.3E-90 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 556 | 861 | 50.403156 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 83 | 120 | 11.265626 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 557 | 572 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 872 | 910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1021 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 872 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 937 | 960 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q930 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Spinacia oleracea OX=3562 GN=SOVF_205740 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology