Basic Information
Locus ID:
gene_23348
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 40515565 | 40517479 | + | gene_23348 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 40,263.30 Da | 53.07 | 72.03 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 179 | 222 | 5.25287E-18 | - |
| Pfam | PF13639 | Ring finger domain | 179 | 222 | 1.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 173 | 231 | 6.82E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 228 | 4.6E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 180 | 221 | 7.5E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 176 | 229 | 0.0071 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 180 | 222 | 13.064645 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 291 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021743613.1 | RING-H2 finger protein ATL54-like [Chenopodium quinoa] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LUT7 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology