Basic Information
Locus ID:
gene_23253
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 39003719 | 39019576 | + | gene_23253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 81,210.10 Da | 27.66 | 93.19 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 526 | 622 | 1.63899E-28 | - |
| Pfam | PF02298 | Plastocyanin-like domain | 45 | 139 | 6.2E-14 | IPR003245 |
| Pfam | PF00168 | C2 domain | 524 | 620 | 1.6E-21 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 328 | 508 | 6.3E-17 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 524 | 651 | 4.32E-29 | IPR035892 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 30 | 145 | 3.25E-18 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 28 | 147 | 5.3E-23 | IPR008972 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 520 | 678 | 6.7E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 525 | 622 | 1.2E-21 | IPR000008 |
| ProSiteProfiles | PS51485 | Phytocyanin domain profile. | 30 | 147 | 27.653811 | IPR003245 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 326 | 509 | 23.478704 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 507 | 625 | 20.655243 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 566 | 579 | 9.4E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 541 | 553 | 9.4E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 588 | 596 | 9.4E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 758 | - | - |
| Coils | Coil | Coil | 651 | 678 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_021856506.1 | synaptotagmin-4 [Spinacia oleracea] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QDC3 | Phytocyanin domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_001832 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology