Basic Information
Locus ID:
gene_23237
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 38837444 | 38839256 | + | gene_23237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 43,503.26 Da | 53.42 | 97.16 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 194 | 322 | 6.8E-17 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 32 | 113 | 1.5E-5 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 27 | 169 | 4.45E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 181 | 323 | 1.44E-22 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 20 | 151 | 3.7E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 175 | 322 | 7.3E-16 | IPR036378 |
| SMART | SM00554 | fasc_3 | 220 | 323 | 2.1E-15 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 182 | 320 | 15.248419 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 21 | 168 | 11.667673 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 370 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60900.1 | FASCICLIN-like arabinogalactan-protein 10. | 0 |
| RefSeq | XP_021858955.1 | fasciclin-like arabinogalactan protein 8 [Spinacia oleracea] | 0 |
| Q9LZX4 | Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S236 | Fasciclin-like arabinogalactan protein 8 OS=Spinacia oleracea OX=3562 GN=SOVF_003130 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology