Basic Information
Locus ID:
gene_23132
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 36723007 | 36729502 | + | gene_23132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 42,249.41 Da | 31.69 | 90.30 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 157 | 236 | 1.3E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 92 | 356 | 4.58E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 46 | 361 | 1.7E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 314 | 354 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 311 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 178 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 220 | 4.7 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021735541.1 | SEC12-like protein 2 [Chenopodium quinoa] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A803M4G0 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology