Basic Information
Locus ID:
gene_23079
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 35997590 | 36001633 | + | gene_23079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 67,270.96 Da | 30.19 | 66.14 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 266 | 395 | 4.01184E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 467 | 596 | 4.97002E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 21 | 151 | 1.38719E-42 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 21 | 152 | 1.3E-33 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 464 | 596 | 9.4E-31 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 266 | 395 | 2.9E-28 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 453 | 595 | 1.15E-41 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 10 | 152 | 8.5E-43 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 255 | 394 | 6.02E-39 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 244 | 395 | 1.0E-47 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 150 | 6.7E-55 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 442 | 596 | 5.9E-53 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 464 | 597 | 4.8E-42 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 21 | 152 | 2.3E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 266 | 396 | 4.8E-34 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 10 | 152 | 52.643391 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 255 | 396 | 48.010063 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 453 | 597 | 47.634895 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021851042.1 | jacalin-related lectin 3-like isoform X1 [Spinacia oleracea] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZSC9 | Jacalin-related lectin 3-like OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology