Basic Information
Locus ID:
gene_23077
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 35988969 | 35991573 | + | gene_23077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 44,073.06 Da | 31.37 | 61.34 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 64 | 191 | 2.66429E-35 | IPR033734 |
| CDD | cd09612 | Jacalin | 239 | 370 | 8.5408E-45 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 64 | 191 | 3.6E-26 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 239 | 369 | 3.9E-32 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 54 | 192 | 2.22E-34 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 227 | 369 | 8.37E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 223 | 370 | 3.5E-51 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 41 | 192 | 2.4E-44 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 64 | 194 | 3.6E-27 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 239 | 371 | 1.2E-42 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 228 | 371 | 49.529495 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 53 | 194 | 38.893482 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.2 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021846285.1 | jacalin-related lectin 3-like isoform X1 [Spinacia oleracea] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R5P4 | Jacalin-type lectin domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_109120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology