Basic Information
Locus ID:
gene_22994
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
OGG1
Description:
N-glycosylase DNA lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 34115877 | 34121488 | + | gene_22994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 45,295.87 Da | 41.83 | 97.04 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00056 | ENDO3c | 200 | 340 | 3.25932E-25 | IPR003265 |
| Pfam | PF07934 | 8-oxoguanine DNA glycosylase, N-terminal domain | 87 | 202 | 3.4E-22 | IPR012904 |
| Pfam | PF00730 | HhH-GPD superfamily base excision DNA repair protein | 203 | 338 | 7.0E-11 | IPR003265 |
| SUPERFAMILY | SSF55945 | TATA-box binding protein-like | 82 | 196 | 4.24E-24 | - |
| SUPERFAMILY | SSF48150 | DNA-glycosylase | 197 | 378 | 7.85E-38 | IPR011257 |
| Gene3D | G3DSA:1.10.1670.10 | - | 170 | 380 | 9.2E-61 | IPR023170 |
| Gene3D | G3DSA:1.10.340.30 | Hypothetical protein; domain 2 | 197 | 321 | 9.2E-61 | - |
| Gene3D | G3DSA:3.30.310.40 | - | 76 | 160 | 5.6E-19 | - |
| SMART | SM00478 | endo3end | 207 | 379 | 9.5E-20 | IPR003265 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 66 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21710.1 | 8-oxoguanine-DNA glycosylase 1. Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme. | 0 |
| RefSeq | XP_021751964.1 | N-glycosylase/DNA lyase OGG1-like [Chenopodium quinoa] | 0 |
| Q9FNY7 | N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana OX=3702 GN=OGG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CRF9 | DNA-(apurinic or apyrimidinic site) lyase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23151 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22994 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018149 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g000040 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40187, Sbi_jg50162, Sbi_jg50163 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1769 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011359 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl46354, Sgl51068 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012587, gene:ENSEOMG00000032017 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009420, CQ.Regalona.r1.3BG0009660 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30039290 |
| Apiaceae | Apium graveolens | 2 | Ag3G01854, AgUnG01141 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G002910 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701337 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.694.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G28857 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G21710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008051m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19270.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g036510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2098 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2240 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13240 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1687 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.858 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021624, Pov_00021625 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb4G22504, Lb4G22507, Lb4G22515, Lb4G22524 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.2141, CH07.2052 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0133810, gene-QOZ80_2AG0133830 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0230920.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G012340, Oco04G013970 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g34750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G160400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201778 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G009970, Chr09G014450, Chr13G010450, Chr13G010460 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G137000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG008970, gene_TRIDC3BG012590 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G075400.1, TraesCS3B02G089300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb243580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18819 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16466 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.864, evm.TU.LG23.147 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g19000, gene.Posoc05g19010 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-9617, nbisL1-mrna-9622 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2482 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18176 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.166 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2905 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20420 |
| Salicaceae | Populus euphratica | 1 | populus_peu14764 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627140 |
| Solanaceae | Solanum chilense | 1 | SOLCI003357900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004889 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15735 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2014 |
| Zosteraceae | Zostera marina | 2 | Zosma03g36970.v3.1, Zosma04g16300.v3.1 |