Basic Information
Locus ID:
gene_22885
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
pattern binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 31517971 | 31522454 | + | gene_22885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 57,752.76 Da | 47.00 | 85.22 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 350 | 475 | 5.4E-13 | IPR000719 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 34 | 77 | 7.3E-7 | IPR025287 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 350 | 478 | 7.87E-25 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 353 | 502 | 2.1E-25 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 307 | 352 | 3.9E-5 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 130 | 481 | 12.117799 | IPR000719 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16260.3 | - | 0 |
| RefSeq | XP_021771625.1 | wall-associated receptor kinase-like 8 isoform X1 [Chenopodium quinoa] | 0 |
| Q9SA25 | Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana OX=3702 GN=WAKL8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZM39 | Protein kinase domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_1001, gene_22879, gene_22881, gene_22883, gene_22885 ... |