halophFGD

Basic Information

Locus ID: gene_22883

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: Epidermal growth factor-like domain.

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_2_Chr_2	31505825	31508964	+	gene_22883

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.94	29,986.41 Da	54.64	66.50	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13947	Wall-associated receptor kinase galacturonan-binding	23	56	6.4E-8	IPR025287
MobiDBLite	mobidb-lite	consensus disorder prediction	254	274	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	255	274	-	-

Gene Ontology

Molecular Function:

GO:0030247 (polysaccharide binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G21250.1	cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides.
RefSeq	XP_021771626.1	wall-associated receptor kinase-like 5 isoform X2 [Chenopodium quinoa]
Swiss-Prot	Q39191	Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2
TrEMBL	A0A7C8ZJW7	GUB_WAK_bind domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	8	gene_1001, gene_22879, gene_22881, gene_22883, gene_22885 ... gene_22886, gene_22887, gene_22888