Basic Information
Locus ID:
gene_2277
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 10862247 | 10869297 | - | gene_2277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 105,794.31 Da | 43.69 | 82.98 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 117 | 160 | 7.16824E-17 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 160 | 5.6E-12 | IPR001841 |
| Pfam | PF16278 | C2HE / C2H2 / C2HC zinc-binding finger | 881 | 934 | 4.1E-10 | IPR032566 |
| Pfam | PF01661 | Macro domain | 565 | 647 | 6.3E-5 | IPR002589 |
| Pfam | PF13671 | AAA domain | 212 | 339 | 1.0E-11 | - |
| Pfam | PF11969 | Scavenger mRNA decapping enzyme C-term binding | 774 | 876 | 1.4E-21 | - |
| SUPERFAMILY | SSF54197 | HIT-like | 752 | 919 | 2.72E-35 | IPR036265 |
| SUPERFAMILY | SSF52949 | Macro domain-like | 541 | 675 | 2.35E-13 | IPR043472 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 165 | 5.81E-19 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 209 | 320 | 6.57E-13 | IPR027417 |
| Gene3D | G3DSA:3.30.428.10 | - | 758 | 938 | 3.3E-49 | IPR036265 |
| Gene3D | G3DSA:3.40.220.10 | Leucine Aminopeptidase, subunit E, domain 1 | 517 | 673 | 5.0E-18 | IPR043472 |
| Gene3D | G3DSA:3.40.50.300 | - | 186 | 368 | 8.3E-35 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 170 | 3.9E-19 | IPR013083 |
| SMART | SM00506 | YBR022w_8 | 542 | 677 | 0.0088 | IPR002589 |
| SMART | SM00184 | ring_2 | 118 | 159 | 2.9E-6 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 114 | 168 | 2.1E-4 | - |
| ProSiteProfiles | PS51154 | Macro domain profile. | 530 | 799 | 11.50731 | IPR002589 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 160 | 12.40076 | IPR001841 |
| ProSitePatterns | PS00892 | HIT domain signature. | 845 | 863 | - | IPR019808 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 748 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 422 | - | - |
| Coils | Coil | Coil | 174 | 194 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01310.1 | APRATAXIN-like. Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro. | 0 |
| RefSeq | XP_010676789.2 | transcription factor bHLH140 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M041 | Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QP47 | Macro domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_162430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14754 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2277 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003299 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4795, Sbi_jg7283 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12719 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001443 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51677, Sgl56981 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005809, gene:ENSEOMG00000023602 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010450, CQ.Regalona.r1.5BG0010950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30267340 |
| Apiaceae | Apium graveolens | 1 | Ag6G01946 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G006400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706712 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.495.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G08666, Ftri15G17084 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G01310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012562m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g058190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0990 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1009 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0376s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32360 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.980, evm.TU.LG01.982 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002710 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09237 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3981, BH01.4373, CH01.4613 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244360, gene-QOZ80_3BG0283800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0384570.1 |
| Poaceae | Oryza coarctata | 1 | Oco06G010940 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g18210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G388500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102425, Pt_Chr0102453 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G032100, Chr04G008750, Chr07G002940 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G345200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG015300, gene_TRIDC4BG033670 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G110800.1, TraesCS4B02G193300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb013510_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3609 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3832 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2826, evm.TU.LG16.826 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37200 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.608 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4584, nbisL1-mrna-4594 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9572 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9592 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1001 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005860 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2672 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16677 |
| Salicaceae | Populus euphratica | 2 | populus_peu25419, populus_peu25441 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630876 |
| Solanaceae | Solanum chilense | 1 | SOLCI001532700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031205 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13211 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2788 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13730.v3.1 |