Basic Information
Locus ID:
gene_22660
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 21522122 | 21544918 | + | gene_22660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 51,091.51 Da | 58.61 | 73.16 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 89 | 141 | 2.08356E-27 | - |
| Pfam | PF00412 | LIM domain | 89 | 143 | 2.5E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 240 | 447 | 3.8E-96 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 115 | 169 | 2.01E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 82 | 114 | 2.42E-6 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 81 | 147 | 6.9E-15 | - |
| SMART | SM00726 | uim | 15 | 34 | 4.2 | IPR003903 |
| SMART | SM00132 | lim_4 | 88 | 140 | 8.4E-10 | IPR001781 |
| SMART | SM00726 | uim | 46 | 65 | 0.62 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 46 | 65 | 9.007181 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 87 | 147 | 11.9692 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 89 | 123 | - | IPR001781 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_052201181.1 | protein DA1-related 1-like isoform X2 [Diospyros lotus] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A7C8ZA37 | LIM zinc-binding domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology