Basic Information
Locus ID:
gene_2231
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_3_Chr_1 | 9578562 | 9583113 | - | gene_2231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 42,928.70 Da | 54.75 | 83.33 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 338 | 381 | 3.03803E-18 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 33 | 102 | 6.0E-14 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 338 | 381 | 1.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 332 | 384 | 2.09E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 307 | 386 | 2.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 339 | 380 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 339 | 381 | 13.049892 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010676294.2 | RING-H2 finger protein ATL22 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8YDV5 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology